Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015946302.1_cds_XP_016488505.1_79133
CDS Infomation

[gene=LOC107808485] [db_xref=GeneID:107808485] [protein=probable protein phosphatase 2C 52] [protein_id=XP_016488505.1] [location=complement(join(51685..52155,56284..56507,56592..56709,56807..57127,57209..57469))] [gbkey=CDS]
Sequence

ATGGGAGGTTGTGTCTCGAGTAGCAGCTCGAGTACTTGTAGTAGTAGGAGCAATGGAGAA
AGAATTTCACATGAATGTTTGGGAATAAACATGTTCGGTCGAAAGAGGATTAGAAGAAGT
CTTTCTGATCCTGCAACCATATTGCAGCATCTGAGTTCGATTCCCAATCGGATCTTTACG
AATGGCAAGAGCCGGACTTCTTGCATATTCACGCAACAGGGACGTAAAGGCGTTAACCAG
GATGCCATGATCGTGTGGGAAGATTTCATGTCAGAAGATGTGACTTTTTGCGGTGTATTT
GATGGCCATGGTCCACATGGCCATCTTGTTGCTCGCAAAGTAAGGGATGCACTGCCCCTG
AAGCTAAAATCCCTCTTGCAGTCATTTGAATCAAATCGCAGTGAGAATCCACAAGTGGAA
ACTGTGGATCCCGATAAGGATCAAGTGACGTCGGATAAAGTGGTCACTCAGTGGAAGGAC
GCTTTCCTTCAATCATACAAGGCAATGGACAAAGAATTGAGGTCCCAACCTAACTTAGAT
TGCTTTTGCAGCGGCAGCACTGCTGTTACTCTAATAAAACAGGGTTCAAACCTTTATATG
GGCTATATTGGTGATTCTCGAGCAATCTTGGCGTCAAAGGATGAGAATGATTCAATGGTA
GCAGTCCAGTTGACTGTTGATCTGAAACCTGATTTACCTAGGGAAGCTGAGAGGATAAAA
CAGTGTAAAGGTCGGGTTTTTGCATTGCAAGATGAGCCCGAAGTGCATAGAGTTTGGTTG
CCATATGATAATGCCCCTGGGTTAGCAATGGCTCGAGCATTTGGCGATTTTTGTGTTAAG
GAATATGGGGTAATTTCTATGCCAGAATTTTCTCACCGGGTTCTTACAGAGAGGGACCAG
TTCATTGTTCTTGCTTCTGATGGGGTTTGGGATGTATTGAGTAATGAAGAAGTTGTTGAT
ATAGTGTCATCAGCTCCTACACGGTCGTCAGCTGCCAGGATCCTAGTCGACTCTGCTGCT
CGTGAATGGAAAACCAAATATCCAACTTCAAAAATGGATGATTGTGCTGTTGTTTGCTTA
TTCTTGGACGGACATATGGACATGGAATCCGACAACGAGGAACAATCCTTTTCTTCTGCT
ACTCTTCAGCGTAACCATTCTGATAACGCAGCCGAATCAGATGATGGGCACAGCTCCGAG
CCATGTCTACAGAGAAATTTCACTGTTAGATCAGGTGAAGAGAATGATGCTTATAAACAA
GTAGTAGCCGAAGCAGAAGCAAATCAGGAAACCGTAGTAACAGAAGATCAGAAATGGTCA
GGATTAGAAGGTGTTACTCGAGTAAACTCTCTGGTTCAGCTTCCAAGATTTTCAGAAGAA
CGGCCAGGACCTTAA

Peptide Sequence

PEP ID

XP_016488505.1
PEP Infomation

PREDICTED: probable protein phosphatase 2C 52 [Nicotiana tabacum]
Sequence

MGGCVSSSSSSTCSSRSNGERISHECLGINMFGRKRIRRSLSDPATILQHLSSIPNRIFT
NGKSRTSCIFTQQGRKGVNQDAMIVWEDFMSEDVTFCGVFDGHGPHGHLVARKVRDALPL
KLKSLLQSFESNRSENPQVETVDPDKDQVTSDKVVTQWKDAFLQSYKAMDKELRSQPNLD
CFCSGSTAVTLIKQGSNLYMGYIGDSRAILASKDENDSMVAVQLTVDLKPDLPREAERIK
QCKGRVFALQDEPEVHRVWLPYDNAPGLAMARAFGDFCVKEYGVISMPEFSHRVLTERDQ
FIVLASDGVWDVLSNEEVVDIVSSAPTRSSAARILVDSAAREWKTKYPTSKMDDCAVVCL
FLDGHMDMESDNEEQSFSSATLQRNHSDNAAESDDGHSSEPCLQRNFTVRSGEENDAYKQ
VVAEAEANQETVVTEDQKWSGLEGVTRVNSLVQLPRFSEERPGP

Transcript Sequence

Gene sequence data has not been registered.